植物吧 关注:550,533贴子:5,537,542

回复:我整理出了植物所有科的系统发生树!!!(植物各科进化树)

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IP属地:吉林来自Android客户端25楼2025-08-08 23:05
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    所以,整个系统发生树中,关系最远的是玫瑰胞藻科和十字花科吗?所以目前的常见的植物界定义是玫瑰胞藻和十字花的最近共同祖先及其所有后代吗?


    IP属地:上海26楼2025-08-10 00:20
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      2025-12-28 02:35:39
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      这个图还满吓人的,点进去感觉像坨有孔虫


      IP属地:上海27楼2025-08-10 00:22
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        求问杜鹃花目的玉蕊科Lecythidaceae在系统发生树上的具体位置如何?我在里面没找到。


        IP属地:广东来自Android客户端28楼2025-10-20 22:51
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          绘制该系统发生树的参考资料:
          引用格式改了一下,这样大家查起来就要更方便一些
          参考网站:Wiki、EOL、GBIF、Duocet多识植物百科、worldfloraonline、POWO、AlgaeBase、Tropicos、ⅰNaturalist
          参考论文:
          [木兰类]Toward a phylogenomic classification of magnoliids
          January 2025American Journal of Botany 112(1)
          DOI:10.1002/ajb2.16451
          [鸭跖草目]Historical biogeography and plastome evolution of Commelinaceae Mirb. (Commelinales) corroborate the East Gondwanan origins
          April 2025BMC Plant Biology 25(1)
          DOI:10.1186/s12870-025-06504-y
          [露兜树目]Resolving phylogenetic conflicts in Pandanales: the dual roles of gene flow and whole-genome duplication
          Frontiers
          Frontiers in Plant Science
          February 202516
          DOI:10.3389/fpls.2025.1511582
          [单子叶植物]Phylogenomic resolution of order- and family-level monocot relationships using 602 single-copy nuclear genes and 1375 BUSCO genes
          Frontiers
          Frontiers in Plant Science
          November 202213
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          [天门冬目]Phylotranscriptomics reveals the phylogeny of Asparagales and the evolution of allium flavor biosynthesis
          Springer Nature
          Nature Communications
          November 202415(1)
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          [禾本目]Genome size variation and whole-genome duplications in the monocot order Poales
          January 2025Plant Systematics and Evolution 311(1)
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          [禾本目]Organelle Phylogenomics and Extensive Conflicting Phylogenetic Signals in the Monocot Order Poales
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          Frontiers in Plant Science
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          September 2023
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          [泽泻目]Phylogenomic Analyses of Alismatales Shed Light into Adaptations to Aquatic Environments
          April 2022Molecular Biology and Evolution 39(5)
          DOI:10.1093/molbev/msac079
          [泽泻目]Phylogenie der ALISMATALES (AlisPP, deutsch)
          May 2023


          IP属地:上海来自Android客户端29楼2025-12-03 20:40
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            楼上没发完的继续发:
            [链型植物门]Chloroplast genome evolution and phylogeny of the early-diverging charophycean green algae with a focus on the Klebsormidiophyceae and Streptofilum
            August 2023Journal of Phycology 59(2)
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            [被子植物]Phylogenomics and the rise of the angiosperms
            Received: 15 September 2023
            Accepted: 15 March 2024
            Published online: 24 April 2024
            DOI:/10.1038/s41586-024-07324-0
            [毛茛目]Genomic incongruence accompanies the evolution of flower symmetry in Eudicots: a case study in the poppy family (Papaveraceae, Ranunculales)
            Frontiers
            Frontiers in Plant Science
            June 202415
            DOI:10.3389/fpls.2024.1340056
            [杜鹃花目]The complete chloroplast genome sequence of Enkianthus perulatus (Miq.) C.K.Schneid. (Ericaceae)
            Taylor & Francis
            Mitochondrial DNA Part B
            April 202510(5):366-371
            DOI:10.1080/23802359.2025.2487065
            [杜鹃花目]A consensus phylogenomic approach highlights the ancient rapid radiation of Ericales
            October 2019
            DOI:10.1101/816967
            [菊目]Why does pollen morphology vary? Evolutionary dynamics and morphospace occupation in the largest angiosperm order (Asterales)
            Wiley
            New Phytologist
            March 2022234(3)
            DOI:10.1111/nph.18024
            [伞形目]Plastid phylogenomic insights into relationships, divergence, and evolution of Apiales
            November 2022Planta 256(6)
            DOI:10.1007/s00425-022-04031-w
            [龙胆目]Chloroplast genome characterization of Uncaria guianensis and Uncaria tomentosa and evolutive dynamics of the Cinchonoideae subfamily
            Springer Nature
            Scientific Reports
            May 202313(8390):1
            DOI:10.1038/s41598-023-34334-1
            [唇形目]Phylogenetic relationships of Cyrtandromoea and Wightia revisited: A new tribe in Phrymaceae and a new family in Lamiales;May 2019,Journal of Systematics and Evolution;
            DOI:10.1111/jse.12513
            [唇形目]LAMIALES Phylogeny Poster (LPP);October 2021;网页链接


            IP属地:上海来自Android客户端30楼2025-12-03 20:41
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              [唇形目]The Isodon serra genome sheds light on tanshinone biosynthesis and reveals the recursive karyotype evolutionary histories within Lamiales;The Plant Journal
              November 2024。121(1);
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              [唇形目]Chromosome-level assembly of Lindenbergia philippensis and comparative genomic analyses shed light on genome evolution in Lamiales;
              Frontiers in Plant Science
              August 2024。15;
              DOI:10.3389/fpls.2024.1444234
              LicenseCC BY 4.0
              [石竹目]Caryophyllales Phylogeny Poster (CPP), 2022/V3
              October 2022
              [虎耳草目]Structural Diversities and Phylogenetic Signals in Plastomes of the Early-Divergent Angiosperms: A Case Study in Saxifragales
              MDPI
              Plants
              December 202211(24):3544
              DOI:10.3390/plants11243544
              [桃金娘目]Comparative analysis of chloroplast genome structure and molecular dating in Myrtales
              December 2024
              [壳斗目]Genome duplications, genomic conflict, and rapid phenotypic evolution characterize the Cretaceous radiation of Fagales
              June 2023
              DOI:10.1101/2023.06.11.544004
              [锦葵目]Taxonomy in the light of incongruence: An updated classification of Malvales and Malvaceae based on phylogenomic data
              January 2025Taxon 74(2)
              DOI:10.1002/tax.13300
              [共球藻纲&绿藻纲]Molecular phylogeny and comparative chloroplast genome analysis of the type species Crucigenia quadrata
              January 2025BMC Plant Biology 25(1):64
              DOI:10.1186/s12870-025-06070-3
              [绿藻门]Phylogenomic analysis restructures the ulvophyceae
              March 2021Journal of Phycology 57(4)
              DOI:10.1111/jpy.13168
              [石莼纲]Phylotranscriptomic insights into a Mesoproterozoic–Neoproterozoic origin and early radiation of green seaweeds (Ulvophyceae)
              [石莼纲]Diversity of Sulfated Polysaccharides From Cell Walls of Coenocytic Green Algae and Their Structural Relationships in View of Green Algal Evolution
              Frontiers
              Frontiers in Plant Science
              September 202011
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              [羽藻目]A metabarcoding framework for facilitated survey of endolithic phototrophs with tufA
              March 2016BMC Ecology 16(8)
              DOI:10.1186/s12898-016-0068-x


              IP属地:上海来自Android客户端31楼2025-12-03 20:42
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                [石莼纲]Systematics of the marine microfilamentous green algae Uronema curvatum and Urospora microscopica (Chlorophyta)
                DOI:/10.1080/09670260903229540
                [石莼纲]Diversity of Sulfated Polysaccharides From Cell Walls of Coenocytic Green Algae and Their Structural Relationships in View of Green Algal Evolution
                Frontiers
                Frontiers in Plant Science
                September 202011
                DOI:10.3389/fpls.2020.554585
                [石莼纲&共球藻纲]Prasiolopsis wulf-kochii (Prasiolales, Trebouxiophyceae), a New Species Occurring in Hairs of the Sloth Bradypus tridactylus
                MDPI
                Plants
                August 202413(17):2405
                DOI:10.3390/plants13172405
                [石莼纲]The New Genus Caulinema Revealed New Insights into the Generic Relationship of the Order Ulotrichales (Ulvophyceae, Chlorophyta)
                MDPI
                Microorganisms
                August 202412(8):1604
                DOI:10.3390/microorganisms12081604
                [石莼纲]Rindifilum ramosum gen. nov., sp. nov., a New Freshwater Genus within the Ulvales (Ulvophyceae, Chlorophyta)
                June 2022Cryptogamie Algologie 43(8)
                DOI:10.5252/cryptogamie-algologie2022v43a8
                [石莼纲]Taxonomic study of a new green alga, Annulotesta cochlephila gen. et sp. nov. (Kornmanniaceae, Ulvales, Ulvophyceae), growing on the shells of door snails
                January 2021Journal of Plant Research 134(Suppl.)
                DOI:10.1007/s10265-020-01239-3
                [环藻目]Phylogeny and morphology of genus Nephrocytium (Sphaeropleales, Chlorophyceae, Chlorophyta) from China
                August 2017Phytotaxa 319(1):84-92
                DOI:10.11646/phytotaxa.319.1.4
                [衣藻目]Screening for microalgal biodiversity from Reunion Island in search of potential sources of natural astaxanthin
                Springer Nature
                Journal of Applied Phycology
                September 202335(6):1-15
                DOI:10.1007/s10811-023-03077-x
                [杉藻目]Complete Mitochondrial Genome and Phylogenetic Analysis of the Red Algae Chondracanthus tenellus (Rhodophyta, Gigartinales) from South Korea
                February 2025Biochemical Genetics
                DOI:10.1007/s10528-025-11063-w


                IP属地:上海来自Android客户端32楼2025-12-03 20:43
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                  2025-12-28 02:29:39
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                  [杉藻目]Characterization of a novel freshwater gigartinalean red alga from Belize, with a description of Sterrocladia belizeana sp. nov. (Rhodophyta)
                  November 2012Phycologia 51(6):627-635
                  DOI:10.2216/12-012.1
                  [杉藻目]The Acrotylaceae (Gigartinales) revisited: molecular data indicate family-level differences in one of the most enigmatic red-algal families
                  Botany 34(3), 305-326, (11 May 2021).
                  DOI:/10.1071/SB20027
                  [杉藻目]Structural Diversity in Galactans From Red Seaweeds and Its Influence on Rheological Properties
                  Frontiers
                  Frontiers in Plant Science
                  September 202011:1-19
                  DOI:10.3389/fpls.2020.559986
                  [地钱目]Dating the evolution of the complex thalloid liverworts (Marchantiopsida): total‐evidence dating analysis supports a Late Silurian‐Early Devonian origin and post‐Mesozoic morphological stasis
                  Wiley
                  New Phytologist
                  September 2023240(5)
                  DOI:10.1111/nph.19254
                  [地钱目]New insights into the phylogeny of the complex thalloid liverworts (Marchantiopsida) based on chloroplast genomes
                  September 2022Cladistics 38(158)
                  DOI:10.1111/cla.12513
                  [地钱目]Defying death: incorporating fossils into the phylogeny of the complex thalloid liverworts (Marchantiidae, Marchantiophyta) confirms high order clades but reveals discrepancies in family-level relationships
                  July 2021Cladistics 37(3)
                  DOI:10.1111/cla.12442
                  [苔藓总纲]Ancient large‐scale gene duplications and diversification in bryophytes illuminate the plant terrestrialization
                  Wiley
                  New Phytologist
                  October 2024245(5):2292-2308
                  DOI:10.1111/nph.20221
                  [叶苔目]Gottschelia (Gottscheliaceae, Marchantiophyta) in Indochina
                  MDPI
                  Plants
                  August 202413(16):2198
                  DOI:10.3390/plants13162198
                  [叶苔目]Phylogenetic Relationships and Morphological Evolution in a Major Clade of Leafy Liverworts (Phylum Marchantiophyta, Order Jungermanniales): Suborder Jungermanniineae
                  February 2015Systematic Botany 40(1)
                  DOI:10.1600/036364415X686314


                  IP属地:上海来自Android客户端33楼2025-12-03 20:43
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                    [苔藓总纲]The Bryophyte Phylogeny Group: A revised familial classification system based on plastid phylogenomic data
                    March 2024Journal of Systematics and Evolution 62(4):577-588
                    DOI:10.1111/jse.13063
                    [灰藓目]A molecular phylogeny of Hypnales (Bryophyta) inferred from ITS2 sequence-structure data
                    November 2010BMC Research Notes 3(1):320
                    DOI:10.1186/1756-0500-3-320
                    [灰藓目]Cleaning a taxonomic dustbin: placing the European Hypnum species in a phylogenetic context!
                    December 2018Bryophyte Diversity and Evolution 40(2):37-54
                    DOI:10.11646/bde.40.2.3
                    [裸子植物]Recent advances on phylogenomics of gymnosperms and an updated classification
                    May 2022Plant Diversity 44(4)
                    DOI:10.1016/网页链接 .2022.05.003


                    IP属地:上海来自Android客户端34楼2025-12-03 20:44
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